<?xml version='1.0' encoding='UTF-8'?><?xml-stylesheet href="http://www.blogger.com/styles/atom.css" type="text/css"?><feed xmlns='http://www.w3.org/2005/Atom' xmlns:openSearch='http://a9.com/-/spec/opensearchrss/1.0/' xmlns:georss='http://www.georss.org/georss' xmlns:gd='http://schemas.google.com/g/2005' xmlns:thr='http://purl.org/syndication/thread/1.0'><id>tag:blogger.com,1999:blog-1058129347612814134</id><updated>2012-02-06T19:29:43.440+01:00</updated><title type='text'>Claus Metzner @ Biophysics</title><subtitle type='html'>Theory Subgroup</subtitle><link rel='http://schemas.google.com/g/2005#feed' type='application/atom+xml' href='http://cmbiophys.blogspot.com/feeds/posts/default'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default?max-results=100'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/'/><link rel='hub' href='http://pubsubhubbub.appspot.com/'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author><generator version='7.00' uri='http://www.blogger.com'>Blogger</generator><openSearch:totalResults>13</openSearch:totalResults><openSearch:startIndex>1</openSearch:startIndex><openSearch:itemsPerPage>100</openSearch:itemsPerPage><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-2171785089028799638</id><published>2015-05-06T14:21:00.063+02:00</published><updated>2009-07-09T09:42:03.054+02:00</updated><title type='text'>scope and vision</title><content type='html'>&lt;span class="author131-188-117-94-1247084807155-44279 b"&gt;&lt;span style="font-weight: bold;"&gt;Spreading of tumor cells&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;One of the central goals in our institute is a better understanding of the spreading of cancer. In this often deadly disease, individual cancer cells are migrating &lt;/span&gt;&lt;span class="author131-188-117-94-1247084807155-44279 b"&gt;through the body to form secondary tumors in distant organs. For a better treatment of cancer, it is crucial to have a detailed model about how these cells are crawling across the dense bio-materials that comprise most of the body's connective tissue and how they find a passable path to their target organs.&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://3.bp.blogspot.com/_pRshAc6BF_w/SlWUgFXfahI/AAAAAAAAAlc/WIAf5VUX7OU/s1600-h/invCell.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 200px; height: 157px;" src="http://3.bp.blogspot.com/_pRshAc6BF_w/SlWUgFXfahI/AAAAAAAAAlc/WIAf5VUX7OU/s200/invCell.gif" alt="" id="BLOGGER_PHOTO_ID_5356350610744502802" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;Cell migration, even when ignoring the possibility of collective cell-cell interactions, is an extremely complex phenomenon. The connective tissue itself, such as collagen, is already a network of bio-polymers with a highly irregular structure and many nonlinear material properties. The cells are constantly changing their shape by forming and retreating protrusions that locally explore this surrounding material. At certain points the cells adhere to the external bio-polymer matrix via transmembrane receptors and exert forces onto the matrix by building contractile stress fibers between these focal adhesion points. By releasing adhesions at the rear part, the center of mass of the pre-stressed cell is moving forward. The stress fibers, mainly consisting of actin filaments crosslinked by myosin motor proteines, and the focal adhesions form together the most important part of the so-called cytoskeleton. This sub-structure of the cell is highly dynamic. Microscopic building blocks are constantly added to (and removed from) the cytoskeleton at different rates. Those biochemical remodelling processes, in turn, are regulated by a complex biochemical signaling network. Using signals transduced by the focal adhesion complexes, this reaction network is somehow processing information about the local environment and on this basis is guiding the cytoskeletal remodelling in a goal-directed way.&lt;br /&gt;&lt;br /&gt;&lt;span style="font-weight: bold;"&gt;Selforganization by adaptive, explorative processes&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;How can a cell orchestrate the many microscopic structural changes of its cytoskeleton, from moment to moment, in such a way that there results on the macroscopic level a goal-directed migration towards its target site ? Or, on a somewhat shorter time-scale, how does the cell evaluate the local possibilites offered by the surrounding bio-polymer network and achieves at least a short move that brings it closer to the goal ?&lt;br /&gt;&lt;br /&gt;One can generate some initial hypothesis for this unsolved problem by looking at similar selforganization processes in biology. A re-occuring pattern of adaptive selforganization is the method of blind trial and error, which also underlies evolution: Instead of executing a detailed, prescribed plan (that would fail anyway when encountering a novel situation) adaptive systems create many random alternatives and then select the ones which show the best signs of being useful in the present situation.&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://2.bp.blogspot.com/_pRshAc6BF_w/SlWUpjEgALI/AAAAAAAAAlk/JSWVdJFFHVY/s1600-h/varselect.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 200px; height: 195px;" src="http://2.bp.blogspot.com/_pRshAc6BF_w/SlWUpjEgALI/AAAAAAAAAlk/JSWVdJFFHVY/s200/varselect.gif" alt="" id="BLOGGER_PHOTO_ID_5356350773336735922" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;Applying this general mechanisms to our special case of cell migration, one might speculate, for example, that the cell is forming explorative protrusions into random directions. Only those protrusions that find a resilient fiber of the tissue matrix connect to this fiber via focal adhesions and are stabilized that way. All other protrusions are recycled. Similar explorative adaption processes may also occur on the more microscopic levels of cytoskeletal structure formation. Thus, a picture of the cell emerges as a multi-level hierarchy of adaptive processes. Each element of the system is autonomously trying out new ways to connect itself with the whole (variation). Elements that find a niche that is useful for the cell as a whole remain stable for a longer time (selection).&lt;br /&gt;&lt;br /&gt;&lt;span style="font-weight: bold;"&gt;Complex Systems&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;In traditional physics, non-linear many-particle systems have been studied for a long time, and complex phenomena such as out-of-equilibrium phase transitions could be successfully explained in that context. More recently, the new field of Complex Systems (CS) has emerged as a natural extension of many-particle systems. The particles are now frequently replaced by "agents", for which reason some CS are also called multi-agent systems. In contrast to the particles of traditional physics, agents can be sub-systems of arbitrary complexity by themselves, such as bio-polymers, stress fibers, organelles, cells, humans, or firms. Inteactions between agents can be much more complicated than the simple force-laws between traditional point particles. However, in order to do theory for such systems, the behaviour of each agent and all interactions must be described in the respective models by clear rules (which may be stochastic). In this case, standard methods of theoretical physics can be applied to CS.&lt;br /&gt;&lt;br /&gt;The theory of complex systems can explain the emergence of global patterns by a causal loop between the micro- and macro-level:&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://4.bp.blogspot.com/_pRshAc6BF_w/SlWVmqgWmmI/AAAAAAAAAl0/_53zjkZzAlM/s1600-h/globPat.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 320px; height: 252px;" src="http://4.bp.blogspot.com/_pRshAc6BF_w/SlWVmqgWmmI/AAAAAAAAAl0/_53zjkZzAlM/s320/globPat.gif" alt="" id="BLOGGER_PHOTO_ID_5356351823304628834" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;CS can also be used to model adaptive, explorative processes. In the language of physics, "variation" corresponds to the fluctuations of variables in a population of agents and selection corresponds to some performance-dependent growth rates of the different agents within this population.&lt;br /&gt;&lt;br /&gt;&lt;span style="font-weight: bold;"&gt;Physics approach to reaction networks, cytoskeletal reorganization and cell migration&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;We try to describe the process of cell migration using the methods and concepts of Complex Systems Theory. While our dream goal would be the development of a true, integrative multi-level model of cell migration, the complexity of the problem demands to focus on the different levels and aspects of the process hierarchy one at a time:&lt;br /&gt;&lt;br /&gt;&lt;/span&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="author131-188-117-94-1247084807155-44279 b"&gt;Self-organization and signal processing in biochemical &lt;a href="http://cmbiophys.blogspot.com/2008/05/reaction-networks.html"&gt;reaction networks&lt;/a&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="author131-188-117-94-1247084807155-44279 b"&gt;Spontaneous &lt;a href="http://cmbiophys.blogspot.com/2008/05/spontaneous-csk-activity.html"&gt;fluctuations of the cytoskeleton&lt;/a&gt; and long-time correlations&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="author131-188-117-94-1247084807155-44279 b"&gt;&lt;a href="http://cmbiophys.blogspot.com/2008/05/rheological-csk-response.html"&gt;Cell migration&lt;/a&gt; as a random walk of adaptive agents in complex potential landscapes&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;span class="author131-188-117-94-1247084807155-44279 b"&gt;&lt;br /&gt;We are also working on&lt;br /&gt;&lt;br /&gt;&lt;/span&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="author131-188-117-94-1247084807155-44279 b"&gt;&lt;a href="http://cmbiophys.blogspot.com/2008/05/force-field-reconstruction.html"&gt;Image processing methods&lt;/a&gt; for detecting the deformation of the bio-polymer networks caused by migrating cells.&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-2171785089028799638?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/2171785089028799638'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/2171785089028799638'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2008/05/research-interests.html' title='scope and vision'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://3.bp.blogspot.com/_pRshAc6BF_w/SlWUgFXfahI/AAAAAAAAAlc/WIAf5VUX7OU/s72-c/invCell.gif' height='72' width='72'/></entry><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-6886941774606386041</id><published>2011-11-17T13:55:00.001+01:00</published><updated>2011-11-25T16:14:50.110+01:00</updated><title type='text'>reconstructing fiber networks from image stacks</title><content type='html'>We have develloped a numerically efficient method to reconstruct a disordered network of thin biopolymers, such as collagen gels, from three-dimensional (3D) image stacks recorded with a confocal microscope. Our method is based on a template matching algorithm that simultaneously performs a binarization and skeletonization of the network. The size and intensity pattern of the template is automatically adapted to the input data so that the method is scale invariant and generic. Furthermore, the template matching threshold is iteratively optimized to ensure that the final skeletonized network obeys a universal property of voxelized random line networks, namely, solid-phase voxels have most likely three solid-phase neighbors in a 3x3 neighborhood. This optimization criterion makes our method free of user-defined parameters and the output exceptionally robust against imaging noise.&lt;br /&gt;&lt;br /&gt;The method is described in an arXiv &lt;a href="http://arxiv.org/abs/1111.3861"&gt;preprint&lt;/a&gt;.&lt;br /&gt;&lt;br /&gt;&lt;a href="http://dl.dropbox.com/u/1720979/freePrograms/index.html"&gt;C++ Implementation and sample data set&lt;/a&gt;&amp;nbsp;(under construction)&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-6886941774606386041?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/6886941774606386041'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/6886941774606386041'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2011/11/reconstruction-of-fiber-networks-from.html' title='reconstructing fiber networks from image stacks'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author></entry><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-5475904728484386774</id><published>2009-07-08T19:46:00.011+02:00</published><updated>2009-07-09T09:36:25.057+02:00</updated><title type='text'>teaching</title><content type='html'>Early period: Semiconductor nanostructures:&lt;br /&gt;&lt;br /&gt;&lt;ul style="font-weight: bold;"&gt;&lt;li&gt;Impurities in semiconductors&lt;/li&gt;&lt;/ul&gt;&lt;ul style="font-weight: bold;"&gt;&lt;li&gt;Concepts of modern semiconductor physics&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span style="font-weight: bold;"&gt;Introduction to Physics&lt;/span&gt; (Mandatory course for non-physicists)&lt;br /&gt;&lt;/li&gt;&lt;/ul&gt;&lt;span class="caption"&gt;&lt;/span&gt;&lt;ul style="font-weight: bold;"&gt;&lt;li&gt;&lt;span class="caption"&gt;Coherent dynamics in semiconductor structures&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;br /&gt;&lt;br /&gt;Later period: Interdisciplinary, complex systems, biophysics:&lt;br /&gt;&lt;br /&gt;&lt;ul style="font-weight: bold;"&gt;&lt;li&gt;Hot topics in modern science&lt;/li&gt;&lt;/ul&gt;&lt;ul style="font-weight: bold;"&gt;&lt;li&gt;Seminar on Physics, Computer Science, Neuro Science and Consciousness &lt;/li&gt;&lt;/ul&gt;&lt;span class="caption"&gt;&lt;/span&gt;&lt;ul style="font-weight: bold;"&gt;&lt;li&gt;&lt;span class="caption"&gt;Computational physics&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul style="font-weight: bold;"&gt;&lt;li&gt;&lt;span class="caption"&gt;Exercises in cell mechanics&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul style="font-weight: bold;"&gt;&lt;li&gt;&lt;span class="caption"&gt;Introduction to theoretical biophysics&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;span class="caption"&gt;&lt;br /&gt;In particular, I regularly teach a series of lectures on&lt;br /&gt;&lt;br /&gt;&lt;/span&gt;&lt;ul style="font-weight: bold;"&gt;&lt;li&gt;&lt;span class="caption"&gt;Complex Systems Theory&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;span class="caption"&gt;&lt;br /&gt;The latter includes a wide spectrum of topics, such as (list not ordered):&lt;br /&gt;&lt;br /&gt;Biochemical reaction networks, systems biology, emergence, artificial life, automata, fractals, stochastic processes, critical phenomena, complex networks, powerlaws, formal systems, L-systems, nonlinear dynamics, chaos, quantum chaos, dissipative systems, synchronization, traffic dynamics, cellular automata, neural networks, kohonen selforg. feature maps, (co-)evolutionary dynamics, game theory, autocatalytic networks, selfreplication, soft matter physics, granular matter physics, biophysics, econo-physics, socio-physics, cybernetics, strategies, selforganization, swarm dynamics, stigmergy, synergetics and information theory.&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;/span&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-5475904728484386774?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/5475904728484386774'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/5475904728484386774'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2009/07/teaching.html' title='teaching'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author></entry><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-2446197653825653713</id><published>2008-07-18T16:35:00.026+02:00</published><updated>2012-02-06T19:29:43.448+01:00</updated><title type='text'>"recently" completed projects</title><content type='html'>&lt;div&gt;&lt;div&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif; font-weight: bold; line-height: 18px;"&gt;Recent Bachelor thesis:&lt;/span&gt;&lt;/div&gt;&lt;div&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif; line-height: 18px;"&gt;Richard Gerum (&lt;a href="http://dl.dropbox.com/u/1720979/thesis/BA_Richard_v2.pdf"&gt;Modellierung des Huddling-Verhaltens&lt;/a&gt; von Pinguinen&amp;nbsp;mittels Multi-Agenten-Simulation)&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li style="line-height: 18px;"&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;Achim Schilling (&lt;/span&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif; line-height: normal;"&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/BA_Achim_Schilling_Final.pdf"&gt;Dynamik des Bindungsverhaltens des Adhäsionsapparates lebender Zellen&lt;/a&gt;)&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li style="line-height: 18px;"&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;Patrick Krauss (&lt;a href="http://dl.dropbox.com/u/1720979/thesis/BA_Patrick_Krauss_Final.pdf"&gt;Rekonstruktion dreidimensionaler Fasernetzwerke aus konfokalen Mikroskopaufnahmen&lt;/a&gt;)&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;span class="Apple-style-span" style="line-height: 18px;"&gt;Janina Lange (&lt;/span&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/BA_Janina_Lange_Final.pdf"&gt;Bestimmung der Porengrößenstatistik von Kollagengelen anhand konfokaler Mikroskopaufnahmen&lt;/a&gt;)&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="line-height: 18px;"&gt;&lt;span class="author131-188-117-94-1246999974485-14128"&gt;&lt;span style="font-family: Verdana, sans-serif;"&gt;Mykhaylo Flipenko (&lt;a href="http://dl.dropbox.com/u/1720979/thesis/BA_Mykhaylo_Filipenko.pdf"&gt;Analytische Untersuchung von Zellmigrationsmodellen&lt;/a&gt;)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="line-height: 18px;"&gt;&lt;span class="author131-188-117-94-1246999974485-14128"&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;Alexander Heinz (&lt;a href="http://dl.dropbox.com/u/1720979/thesis/BA_Alexander_Heinz.pdf"&gt;Numerische Analyse der Zellmigration in Kollagengewebe&lt;/a&gt;)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;div&gt;&lt;span style="font-family: Verdana, sans-serif;"&gt;&lt;span style="line-height: 18px;"&gt;&lt;br /&gt;&lt;/span&gt;&lt;/span&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div&gt;&lt;span style="font-family: Verdana, sans-serif;"&gt;&lt;span style="line-height: 18px;"&gt;&lt;br /&gt;&lt;/span&gt;&lt;/span&gt;&lt;/div&gt;&lt;div&gt;&lt;b&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;/span&gt;&lt;/b&gt;&lt;/div&gt;&lt;div&gt;&lt;b&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;/span&gt;&lt;/b&gt;&lt;/div&gt;&lt;div&gt;&lt;b&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;Recent Diploma and PhD thesis:&lt;/span&gt;&lt;/b&gt;&lt;/div&gt;&lt;div&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;/span&gt;&lt;/div&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;Arthur Franz, "&lt;/span&gt;&lt;/span&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/ArthurFranz_DA.pdf"&gt;Evolution geregelter chemischer Netzwerke&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;" (Diploma), Erlangen, Juli 2006&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;Carina Raupach, "&lt;/span&gt;&lt;/span&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/CarinaRaupach_PhD.pdf"&gt;On the spontaneous motion of cytoskeletally bound markers&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;" [&lt;span class="Apple-style-span"&gt;File Size 32MB !&lt;/span&gt;] (PhD), Juli 2008&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;Max Sajitz-Hermstein, "&lt;/span&gt;&lt;/span&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/MaxSajitz-Hermstein_DA.pdf"&gt;Stochastische Modelle fraktionaler Bewegungsvorgänge im lebenden Zytoskelett&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;" (Diploma), Erlangen, Juli 2009&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;Franz Stadler, "&lt;a href="http://dl.dropbox.com/u/1720979/thesis/Stadler_DA_Final.pdf"&gt;Stochastische Modelle zur Beschreibung der anomalen Bewegungsstatistik migrierender Tumorze&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/Stadler_DA_Final.pdf"&gt;llen&lt;/a&gt;" (Diploma), Erlangen, November 2010&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;div&gt;&lt;span style="font-family: Verdana, sans-serif;"&gt;&lt;br /&gt;&lt;/span&gt;&lt;/div&gt;&lt;div&gt;&lt;span style="font-family: Verdana, sans-serif;"&gt;&lt;br /&gt;&lt;/span&gt;&lt;/div&gt;&lt;div&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;/span&gt;&lt;/div&gt;&lt;div&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif; line-height: 18px;"&gt;&lt;span style="color: black;"&gt;&lt;span style="color: black;"&gt;&lt;span style="color: #cc0000;"&gt;&lt;span style="color: black;"&gt;&lt;span style="font-weight: bold;"&gt;&lt;span class="Apple-style-span"&gt;Recent short term projects&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="color: black;"&gt;&lt;span style="color: black;"&gt;&lt;span class="Apple-style-span"&gt;&lt;/span&gt;&lt;span class="Apple-style-span"&gt;&lt;br /&gt;&lt;a href="http://sites.google.com/site/cmslibrarysite/Home/Projektarbeit_Michael_Schmidberger_2009.pdf?attredirects=0" style="color: #cc0000;"&gt;&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/div&gt;&lt;div&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif; line-height: 18px;"&gt;&lt;span class="Apple-style-span"&gt;&lt;a href="http://sites.google.com/site/cmslibrarysite/Home/Projektarbeit_Michael_Schmidberger_2009.pdf?attredirects=0" style="color: #cc0000;"&gt;&lt;span class="Apple-style-span"&gt;Michael Schmidberger&lt;/span&gt;&lt;/a&gt;&lt;/span&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt; &lt;/span&gt;&lt;/span&gt;&lt;span style="font-style: italic;"&gt;&lt;span class="Apple-style-span"&gt;(Statistical fluctuations in covalent modification cycles)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif; line-height: 18px;"&gt;&lt;a href="http://dl.getdropbox.com/u/1720979/various/Protokoll_Anja_Michl.pdf" style="color: #cc0000;"&gt;&lt;span class="Apple-style-span"&gt;Anja Michl&lt;/span&gt;&lt;/a&gt;&lt;span class="Apple-style-span"&gt; &lt;/span&gt;&lt;span style="font-style: italic;"&gt;&lt;span class="Apple-style-span"&gt;(Selfpropelled agents in random potential landscapes)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif; line-height: 18px;"&gt;&lt;a href="http://dl.getdropbox.com/u/1720979/various/Project%20Report%20-%20%27%27Collective%20Cell%20Invasion%27%27%20-%20by%20Sebastian%20Probst.pdf" style="color: #804000;"&gt;&lt;span class="Apple-style-span"&gt;Sebastian Probst&lt;/span&gt;&lt;/a&gt;&lt;span class="Apple-style-span"&gt; &lt;/span&gt;&lt;span style="font-style: italic;"&gt;&lt;span class="Apple-style-span"&gt;(Collective invasion of cells into complex tissue)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif; line-height: 18px;"&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/BachelorTh-AKronwald.pdf" style="color: #cc0000;"&gt;&lt;span class="Apple-style-span"&gt;Andreas Kronwald&lt;/span&gt;&lt;/a&gt;&lt;span class="Apple-style-span"&gt; (&lt;/span&gt;&lt;span style="font-style: italic;"&gt;&lt;span class="Apple-style-span"&gt;The cluster model of tumor cell invasion&lt;/span&gt;&lt;/span&gt;&lt;span class="Apple-style-span"&gt;)&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif; line-height: 18px;"&gt;&lt;span style="color: black;"&gt;&lt;span style="color: black;"&gt;&lt;span class="Apple-style-span"&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/SaschaReport.pdf"&gt;Sascha &lt;/a&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span class="author131-188-117-94-1246999974485-14128"&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/SaschaReport.pdf"&gt;Maisel&lt;/a&gt; &lt;/span&gt;&lt;/span&gt;&lt;span style="font-style: italic;"&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;(Modelling of cytoskeletal dynamics)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="line-height: 18px;"&gt;&lt;span class="author131-188-117-94-1246999974485-14128"&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/RichardGerum_ForceTransmission.pdf"&gt;Richard Gerum&lt;/a&gt; (&lt;i&gt;Kraftausbreitung im Fasernetzwerk&lt;/i&gt;)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="line-height: 18px;"&gt;&lt;span class="author131-188-117-94-1246999974485-14128"&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/BA_Mykhaylo_Filipenko.pdf"&gt;Mykhaylo Flipenko&lt;/a&gt; (&lt;i&gt;Analytische Untersuchung von Zellmigrationsmodellen&lt;/i&gt;)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="line-height: 18px;"&gt;&lt;span class="author131-188-117-94-1246999974485-14128"&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/BA_Alexander_Heinz.pdf"&gt;Alexander Heinz&lt;/a&gt; (&lt;i&gt;Numerische Analyse der Zellmigration in Kollagengewebe&lt;/i&gt;)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="Apple-style-span" style="line-height: 18px;"&gt;&lt;span class="author131-188-117-94-1246999974485-14128"&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span"&gt;&lt;span class="Apple-style-span" style="font-family: Verdana, sans-serif;"&gt;&lt;a href="http://dl.dropbox.com/u/1720979/thesis/FOPA_Krueger_Schmidt.pdf"&gt;Benedikt Krüger &amp;amp; Michael Schmidt&lt;/a&gt; (&lt;i&gt;The shear response of random networks made of naturally bent fibers - a numerical investigation&lt;/i&gt;)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;/div&gt;&lt;div&gt;&lt;span class="Apple-style-span" style="font-family: 'Trebuchet MS', Verdana, Arial, sans-serif; font-size: -webkit-xxx-large; line-height: 18px;"&gt;&lt;span class="Apple-style-span" style="font-family: verdana;"&gt;&lt;span class="Apple-style-span" style="font-size: small;"&gt;&lt;span class="Apple-style-span" style="font-family: 'Trebuchet MS', Verdana, Arial, sans-serif; font-size: -webkit-xxx-large;"&gt;&lt;span class="author131-188-117-94-1246999974485-14128"&gt;&lt;span style="font-style: italic;"&gt;&lt;span class="Apple-style-span" style="font-family: verdana;"&gt;&lt;span class="Apple-style-span" style="font-size: small;"&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-2446197653825653713?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/2446197653825653713'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/2446197653825653713'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2008/07/7-recent-thesis.html' title='&quot;recently&quot; completed projects'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author></entry><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-1252537805907682808</id><published>2008-05-06T21:22:00.024+02:00</published><updated>2010-03-04T16:00:01.933+01:00</updated><title type='text'>open projects</title><content type='html'>&lt;span style="color: rgb(0, 0, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;The theory subgroup is offering many opportunities for &lt;span style="color: rgb(204, 0, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;collaborations of all kinds (short time projects, bachelor/master/diploma thesis). The following list shows some of the possible future directions of the group:&lt;br /&gt;&lt;br /&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;&lt;br /&gt;&lt;/span&gt;&lt;/span&gt;&lt;div style="font-weight: bold;" class="" id="magicdomid10"&gt;&lt;span class="author-g-tipjyng60frrdbqy"&gt;A. Reaction networks&lt;/span&gt;&lt;/div&gt;&lt;div class="" id="magicdomid13"&gt;&lt;br /&gt;&lt;/div&gt;&lt;div class="ace-line" id="magicdomid1004"&gt;&lt;a href="http://arxiv.org/PS_cache/arxiv/pdf/0904/0904.0947v4.pdf"&gt;&lt;span class="author-g-tipjyng60frrdbqy"&gt;So far&lt;/span&gt;&lt;/a&gt;&lt;span class="author-g-tipjyng60frrdbqy"&gt;, we have analyzed the probability distribution (PDF) of the temporal concentration fluctuations in a simple covalent modification cycle (CMC). The results lead to wide field of open questions, which could be addressed in future projects:&lt;/span&gt;&lt;/div&gt;&lt;div class="" id="magicdomid15"&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="author-g-tipjyng60frrdbqy"&gt;What are the concentration fluctuations in systems slightly more complex than a standard CMC, such as chains of CMCs, CMCs with feedback, and so on. These modifications are found frequently in the reaction networks of living cells, and they have fascinating properties even when approximated as deterministic systems (see, for example, the review article of &lt;a href="https://dl.getdropbox.com/u/1720979/essentialPapers/kholodenko06_CellSignallingTimeSpace.pdf"&gt;Kholodenko&lt;/a&gt;).&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;/div&gt;&lt;div class="" id="magicdomid17"&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="author-g-tipjyng60frrdbqy"&gt;How can the reaction networks control the cell activity despite the strong fluctuations ? Does the cell somehow fine-tune the reaction parameters of the networks in order to minimize fluctuations ? Do the parameters of known biochemical reaction networks confirm this hypothesis ? Could the fine-tuning be a self-regulated property ?&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;/div&gt;&lt;div class="ace-line" id="magicdomid602"&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="author-g-tipjyng60frrdbqy"&gt;Or &lt;/span&gt;&lt;span class="author-g-j707hqqy61srwla9"&gt;should one give up the view of biochemical reaction networks as networks of boolean switches (where each population of signalling molecules can only be in one of two states, "on"  or "off") ? Should biochemical reaction networks be seen in a way similar to analog electronics circuits ?&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;/div&gt;&lt;div class="ace-line" id="magicdomid755"&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="author-g-j707hqqy61srwla9"&gt;If so, is it possible to realize with biochemical reaction networks functions analogous to "voltage controlled oscillators", "peak detektors", "sample and hold", or "filters" of various kinds ?&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;/div&gt;&lt;div class="ace-line" id="magicdomid1594"&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="author-g-j707hqqy61srwla9"&gt;Or can the spontaneous concentration fluctuations in biochemical reaction networks be interpreted similar to the autonomous activity of neural networks, which is only modulated by the "data input" of the receptors (see recent article by &lt;a href="https://dl.getdropbox.com/u/1720979/essentialPapers/gros09_AutonActiveNeuralNet.pdf"&gt;Gros&lt;/a&gt;&lt;/span&gt;&lt;span class="author-g-j707hqqy61srwla9"&gt;)  ?&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;/div&gt;&lt;div class="ace-line" id="magicdomid2373"&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="author-g-j707hqqy61srwla9"&gt;To which extent can the cell make use of the concentration fluctuations ? For such an investigation, a good starting point would be the bacterial chemotaxis network that contains a CMC to control the rotation direction of the flagella motor. Most relevant parameters of the CMC have been measured, and so it would be possible to apply our fluctuation theory to this system. It is known that the statistics of the motor rotation has some unusual power-law properties. Can those be explained by the biochemical statistics of the CMC ?&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;/div&gt;&lt;div class="ace-line" id="magicdomid2372"&gt;&lt;ul&gt;&lt;li&gt;&lt;span class="author-g-j707hqqy61srwla9"&gt;The fluctuation theory of biochemical reaction networks is also relevant to supermolecular assemblies in the cell, such as the focal adhesion complexes (FAC). Molecules are contantly added to and removed from the FAC. Using experimental techniques such as fluorescence correlation spectroscopy (which are available in our lab) the temporal statistics of such nonlinear, nonequilibrium and spatially inhomogeneous remodelling processes can be measured. It would therefore be possible to directly test the probability density functions and temporal correlation functions predicted by theoretical models of FAC remodelling.&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;/div&gt;&lt;span style="font-weight: bold;"&gt;&lt;br /&gt;B. Cytoskeletal fluctuations&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;span style="font-style: italic;"&gt;Under construction.&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;span style="font-weight: bold;"&gt;&lt;br /&gt;C. Cell migration&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;span style="font-style: italic;"&gt;Under construction.&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;span style="font-weight: bold;"&gt;&lt;br /&gt;D. Stress and strain field reconstruction&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;At present, we are seeking students for our &lt;a href="http://cmbiophys.blogspot.com/2008/05/force-field-reconstruction.html"&gt;image registration project&lt;/a&gt;. See also this &lt;a href="http://sites.google.com/site/cmslibrarysite/Home/090814_ausschreibung_matching.pdf?attredirects=0"&gt;flyer&lt;/a&gt;.&lt;br /&gt;&lt;br /&gt;-----------------------------------------------------------------------------------&lt;br /&gt;&lt;br /&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;All collaborators&lt;/span&gt;&lt;/span&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;, while working on a research topic at the front of current science, &lt;/span&gt;&lt;/span&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;will learn analytical methods as well as numerical techniques. Our institute has the advantage of a truely interdisciplinary environment and provides direct interactions between theorists and experimentalists. If you are interested in any of our current topics, or have own ideas for projects, please don't hesitate to contact me.&lt;br /&gt;&lt;br /&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;-----------------------------------------------------------------------------------&lt;/span&gt;&lt;/span&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-1252537805907682808?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/1252537805907682808'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/1252537805907682808'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2008/05/6-open-positions.html' title='open projects'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author></entry><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-9068918608630980397</id><published>2008-05-06T16:31:00.030+02:00</published><updated>2009-09-21T11:56:53.951+02:00</updated><title type='text'>stress and strain field reconstruction</title><content type='html'>Whenever&lt;span style="font-weight: bold; color: rgb(153, 0, 0);"&gt; &lt;span style="color: rgb(0, 0, 0);"&gt;living cells are actively migrating through biological tissue&lt;/span&gt;&lt;/span&gt;, they are exerting forces onto the surrounding material. Depending on the local mechanical properties, the &lt;span style="font-weight: bold; color: rgb(0, 0, 0);"&gt;cellular traction forces lead to complex deformations of the material&lt;/span&gt;.&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://3.bp.blogspot.com/_pRshAc6BF_w/SjpAcQQh72I/AAAAAAAAAjs/m8sfDJuSWCw/s1600-h/screen_003.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 200px; height: 92px;" src="http://3.bp.blogspot.com/_pRshAc6BF_w/SjpAcQQh72I/AAAAAAAAAjs/m8sfDJuSWCw/s200/screen_003.gif" alt="" id="BLOGGER_PHOTO_ID_5348658361600700258" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;An important step towards a biophysical understanding of cancer cell migration is a quantitative measurement of these material deformations. For this purpose, the material is directly observed with optical microscopy and an image of the region around the cell is taken.&lt;br /&gt;&lt;br /&gt;Next, we switch off the force generating apparatus of the cell by applying suitable chemicals. Once the cell relaxes, we take a second image, showing the deformation state of the material without the cellular forces.&lt;br /&gt;&lt;br /&gt;&lt;span style="font-weight: bold; color: rgb(0, 0, 0);"&gt;By comparing the strained and relaxed images, it is possible to extract a quantitative deformation map&lt;/span&gt;, connecting each point of image 1 with the corresponding point of image 2 by a shift vector. This procedure of matching points between an original and a deformed image is known as "&lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;image registration&lt;/span&gt;".&lt;br /&gt;&lt;br /&gt;The image registration procedure becomes easier if the material contains landmark objects of known shape. For this purpose we attach &lt;span style="font-weight: bold; color: rgb(0, 0, 0);"&gt;fluorescent markers&lt;/span&gt; to the material (spherical beads in random distribution). The picture below shows a pair of images containing such micro-beads:&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://1.bp.blogspot.com/_pRshAc6BF_w/Sjoqo-ml-LI/AAAAAAAAAjE/6HSem8TRKCE/s1600-h/screen_001.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 200px; height: 106px;" src="http://1.bp.blogspot.com/_pRshAc6BF_w/Sjoqo-ml-LI/AAAAAAAAAjE/6HSem8TRKCE/s200/screen_001.gif" alt="" id="BLOGGER_PHOTO_ID_5348634390943889586" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;Since each micro-bead is large enough to affect several neighboring pixels of the camera, a shift of the bead position can be detected with &lt;span style="font-weight: bold; color: rgb(0, 0, 0);"&gt;sub-pixel resolution&lt;/span&gt;, using techniques such as center-of-mass algorithms. In fact, we achieve a resolution in the nanometer range with our purely optical setup. Nevertheless, the registration procedure occasionally fails, for example in cases of clusters of close-by beads.&lt;br /&gt;&lt;br /&gt;In the future, we would like to become independent from artificial markers and instead &lt;span style="font-weight: bold; color: rgb(0, 0, 0);"&gt;use the natural features of the material&lt;/span&gt; itself as landmarks. This would require an image registration method which can deal with complex shapes, such as fibres:&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://4.bp.blogspot.com/_pRshAc6BF_w/SjoquXcmbfI/AAAAAAAAAjM/_Og4kkQ9Rx0/s1600-h/screen_002.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 200px; height: 106px;" src="http://4.bp.blogspot.com/_pRshAc6BF_w/SjoquXcmbfI/AAAAAAAAAjM/_Og4kkQ9Rx0/s200/screen_002.gif" alt="" id="BLOGGER_PHOTO_ID_5348634483512208882" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;Another ongoing project is the&lt;span style="color: rgb(153, 0, 0);"&gt; &lt;/span&gt;&lt;span style="font-weight: bold; color: rgb(0, 0, 0);"&gt;reconstruction of the cellular forces from the known deformation field of the material&lt;/span&gt;. This, of course, requires a model of the &lt;span style="font-weight: bold; color: rgb(0, 0, 0);"&gt;mechanical properties of the material&lt;/span&gt;. For this purpose, we are using two-dimensional essays, in which the cell is placed onto a surface of an artificial, linear elastic material with a well-defined Youngs modulus and Poisson ratio. However, in the case of a realistic biological medium, such as a &lt;span style="font-weight: bold; color: rgb(0, 0, 0);"&gt;three-dimensional random collagen fibre network&lt;/span&gt;, the mechanical properties are extremely complex.&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://4.bp.blogspot.com/_pRshAc6BF_w/SjpBC_XsNxI/AAAAAAAAAj0/GVeajf1El1E/s1600-h/screen_004.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 200px; height: 130px;" src="http://4.bp.blogspot.com/_pRshAc6BF_w/SjpBC_XsNxI/AAAAAAAAAj0/GVeajf1El1E/s200/screen_004.gif" alt="" id="BLOGGER_PHOTO_ID_5348659027082229522" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;It is an open question to which extent the linear elastic model of a homogeneous, isotropic medium is applicable to such fibre networks, even on length scales much larger than the typical mesh size.&lt;br /&gt;&lt;br /&gt;&lt;div style="text-align: center;"&gt;-------------------------------------------------&lt;br /&gt;&lt;/div&gt;&lt;br /&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;We are now working on the development of a robust, fast registration method, taylor-made for the above applications. It will be suitable for a multigrid solution and eventually is to be implemented on a graphics processing unit (GPU). We are &lt;a href="http://sites.google.com/site/cmslibrarysite/Home/090814_ausschreibung_matching.pdf?attredirects=0"&gt;seeking collaborators&lt;/a&gt; for this project.&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;div style="text-align: center;"&gt;-------------------------------------------------&lt;br /&gt;&lt;br /&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-9068918608630980397?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/9068918608630980397'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/9068918608630980397'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2008/05/force-field-reconstruction.html' title='stress and strain field reconstruction'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://3.bp.blogspot.com/_pRshAc6BF_w/SjpAcQQh72I/AAAAAAAAAjs/m8sfDJuSWCw/s72-c/screen_003.gif' height='72' width='72'/></entry><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-490001849304441592</id><published>2008-05-06T16:30:00.028+02:00</published><updated>2009-07-15T09:55:31.238+02:00</updated><title type='text'>reaction networks</title><content type='html'>&lt;span style="color: rgb(0, 102, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;On the lowest level, cells have to be described by the theory of nonlinear biochemical reaction networks (for an introductory overview, see this &lt;a href="http://www.rent-a-theorist.de/Rumpelkammer/ChemKin.pdf"&gt;talk&lt;/a&gt;).&lt;/span&gt;&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;span style="color: rgb(0, 102, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;We suspect that the fundamental mechanisms of adaptive selforganization, driven by fluctuations and varying growth rates, already apply at this molecular level (see following &lt;a href="http://sites.google.com/site/cmslibrarysite/Home/noiseInBiochemSigCycles.pdf?attredirects=0"&gt;talk&lt;/a&gt;). As a first step in this direction, we are analyzing the&lt;span style="font-weight: bold;"&gt; statistical properties of fluctuations in typical reaction networks&lt;/span&gt;.&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://1.bp.blogspot.com/_pRshAc6BF_w/SlWfzQpgiUI/AAAAAAAAAmE/A3hzdkIIHa4/s1600-h/cmcChain.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 320px; height: 219px;" src="http://1.bp.blogspot.com/_pRshAc6BF_w/SlWfzQpgiUI/AAAAAAAAAmE/A3hzdkIIHa4/s320/cmcChain.gif" alt="" id="BLOGGER_PHOTO_ID_5356363034818283842" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="color: rgb(0, 102, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;&lt;br /&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="color: rgb(0, 102, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;Such networks usually involve reversible covalent modification of signaling molecules, such as protein phosphorylation. Under conditions of small molecule numbers, as is frequently the case in living cells, mass action theory fails to describe the dynamics of such systems. Instead, the biochemical reactions must be treated as stochastic processes that intrinsically generate concentration fluctuations of the chemicals. &lt;/span&gt;&lt;/span&gt;&lt;br /&gt;&lt;span style="color: rgb(0, 102, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;&lt;br /&gt;In a &lt;a href="http://arxiv.org/PS_cache/arxiv/pdf/0904/0904.0947v4.pdf"&gt;recent study&lt;/a&gt; w&lt;/span&gt;&lt;/span&gt;&lt;span style="color: rgb(0, 102, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;e have investigated the stochastic reaction &lt;span style="font-weight: bold;"&gt;kinetics of covalent modification cycles&lt;/span&gt; (CMCs) by analytical modeling and numerically exact Monte-Carlo simulation of the temporally fluctuating concentration.&lt;br /&gt;&lt;br /&gt;&lt;/span&gt;&lt;/span&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://2.bp.blogspot.com/_pRshAc6BF_w/SlTWM5D8IBI/AAAAAAAAAkU/NRZne5_J-2g/s1600-h/cmc.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 200px; height: 177px;" src="http://2.bp.blogspot.com/_pRshAc6BF_w/SlTWM5D8IBI/AAAAAAAAAkU/NRZne5_J-2g/s200/cmc.gif" alt="" id="BLOGGER_PHOTO_ID_5356141373814480914" border="0" /&gt;&lt;/a&gt;&lt;span style="color: rgb(0, 102, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;&lt;br /&gt;Depending on the parameter regime, we have found for the probability density of the concentration qualitatively distinct classes of distribution functions, including power law distributions with a fractional and tunable exponent.&lt;/span&gt;&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://3.bp.blogspot.com/_pRshAc6BF_w/SlTXePD0mvI/AAAAAAAAAkk/HEj8yVNhTpk/s1600-h/screen_002.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 200px; height: 156px;" src="http://3.bp.blogspot.com/_pRshAc6BF_w/SlTXePD0mvI/AAAAAAAAAkk/HEj8yVNhTpk/s200/screen_002.gif" alt="" id="BLOGGER_PHOTO_ID_5356142771288972018" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;Beside &lt;span style="font-weight: bold;"&gt;extremely broad probability distributions&lt;/span&gt;, the intrinsic concentration fluctuations in biochemical reaction networks may also give rise to &lt;span style="font-weight: bold;"&gt;long-time correlations&lt;/span&gt;. The fractional powerlaw correlations observed in the spoantaneous cytoskeletal fluctuations might then be explained by the underlying biochemical reaction processes. We have explored some of these possibilities in a recent diploma &lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/maxThesis.pdf"&gt;thesis&lt;/a&gt; (German). Parts of it have been publihed as a  &lt;a href="http://www.rent-a-theorist.de/Rumpelkammer/longbeach08.pdf"&gt;poster&lt;/a&gt;&lt;span style="font-style: italic; color: rgb(0, 102, 0);"&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;.&lt;br /&gt;&lt;/span&gt;&lt;/span&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-490001849304441592?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/490001849304441592'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/490001849304441592'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2008/05/reaction-networks.html' title='reaction networks'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://1.bp.blogspot.com/_pRshAc6BF_w/SlWfzQpgiUI/AAAAAAAAAmE/A3hzdkIIHa4/s72-c/cmcChain.gif' height='72' width='72'/></entry><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-209573712919690052</id><published>2008-05-06T16:29:00.055+02:00</published><updated>2010-02-04T10:37:40.373+01:00</updated><title type='text'>cytoskeletal fluctuations</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;span class="Apple-style-span"  style="color:#551A8B;"&gt;&lt;u&gt;&lt;br /&gt;&lt;/u&gt;&lt;/span&gt;&lt;/div&gt;&lt;div&gt;&lt;br /&gt;&lt;/div&gt;&lt;div&gt;&lt;br /&gt;&lt;/div&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://bp2.blogger.com/_pRshAc6BF_w/SCBx-zDRfGI/AAAAAAAAAHQ/cqC9RMwACkk/s1600-h/cskNet2.gif"&gt;&lt;img style="margin: 0pt 10px 10px 0pt; float: left; cursor: pointer;" src="http://bp2.blogger.com/_pRshAc6BF_w/SCBx-zDRfGI/AAAAAAAAAHQ/cqC9RMwACkk/s200/cskNet2.gif" alt="" id="BLOGGER_PHOTO_ID_5197279293655317602" border="0" /&gt;&lt;/a&gt;&lt;span style="font-style: italic;font-size:85%;"&gt;The CSK as a dynamic network of passive (blue) and active (red)  acto-myosin stress fibers. A microbead (gray) becomes a node in the network and allows to &lt;/span&gt;&lt;span style="color: rgb(0, 0, 0);font-size:85%;"&gt;&lt;span style="font-style: italic;"&gt;to measure the response to externally applied forces (upper right inset), or to &lt;/span&gt;&lt;/span&gt;&lt;span style="color: rgb(0, 0, 0);"&gt;&lt;span style="font-style: italic;"&gt;&lt;span style="font-size:85%;"&gt;observe spontaneous fluctuations (lower right inset). The tractions of the active fibers create a force field (black arrows) in the surrounding matrix.&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;/span&gt;&lt;span&gt;When microbeads are attached to the CSK of living cells, the beads start to move spontaneously in a random fashion.  The amplitude of the bead's velocity fluctuations&lt;span&gt; &lt;/span&gt;are on a much higher level than in the case of Brownian motion, indicating that they are not driven by thermal forces, but result from&lt;span&gt; &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;ATP-powered remodelling processes of the CSK&lt;/span&gt;&lt;/span&gt;.&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://1.bp.blogspot.com/_pRshAc6BF_w/SCFEiDDRfJI/AAAAAAAAAHs/3TyGrjjcuOI/s1600-h/screen_001.gif"&gt;&lt;img style="margin: 0pt 10px 10px 0pt; float: left; cursor: pointer;" src="http://1.bp.blogspot.com/_pRshAc6BF_w/SCFEiDDRfJI/AAAAAAAAAHs/3TyGrjjcuOI/s200/screen_001.gif" alt="" id="BLOGGER_PHOTO_ID_5197510796687539346" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;span&gt;Some &lt;/span&gt;&lt;span&gt;measured &lt;/span&gt;&lt;span&gt;example &lt;/span&gt;&lt;span&gt;trajectories &lt;/span&gt;&lt;span&gt;of CSK-bound beads &lt;/span&gt;&lt;span&gt;(2-5)&lt;/span&gt;&lt;span&gt; &lt;/span&gt;&lt;span&gt;. For comparison, case 1 demonstrates the amount of thermal and camera noise of an immobilized bead.  [Data from C. Raupach].&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;/span&gt;&lt;br /&gt;A detailed statistical analysis of many recorded bead trajectories reveals that the &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;diffusion process is anomaleous&lt;/span&gt; in several respects: As a function of lag-time, one finds at around 1 sec a &lt;span style="font-weight: bold;"&gt;transition from sub- to superdiffusive transport&lt;/span&gt;, accompanied by &lt;span&gt;characteristic changes of the turning angle distributions&lt;/span&gt;. On longer time scales, the mean squared displacement grows with a &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;fractional powerlaw exponent&lt;/span&gt;.  The &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;step width distribution&lt;/span&gt;&lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;s&lt;/span&gt; are &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;non-gaussian with positive kurtosis&lt;/span&gt;.&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://2.bp.blogspot.com/_pRshAc6BF_w/SCFN9TDRfLI/AAAAAAAAAH8/VIUPvk73X20/s1600-h/screen_006.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer;" src="http://2.bp.blogspot.com/_pRshAc6BF_w/SCFN9TDRfLI/AAAAAAAAAH8/VIUPvk73X20/s320/screen_006.gif" alt="" id="BLOGGER_PHOTO_ID_5197521160443624626" border="0" /&gt;&lt;/a&gt;&lt;span&gt;The measured mean squared displacement (MSD) of 3 different diffusing, CSK-bound beads (2-4). Case 1 corresponds to an immobilized bead. The turning angle distributions (TAD) indicate antipersistence for lag times smaller than 1 sec and persistent transport for longer lags. &lt;/span&gt;&lt;span&gt;[Data from C. Raupach]&lt;/span&gt;&lt;br /&gt;&lt;span&gt;&lt;br /&gt;&lt;/span&gt;&lt;span&gt;&lt;span&gt;Viewed as an abstract &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;stochastic process&lt;/span&gt;, the bead motion can be described as a specific kind of &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;persistent random walk&lt;/span&gt; on a white noise floor. This model can &lt;span style="font-weight: bold;"&gt;reproduce all the experimental distributions&lt;/span&gt; and successfully &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;predicts new relations&lt;/span&gt; between certain observables. However, it cannot explain the origin of the long time correlations in the bead's transport directions.&lt;br /&gt;&lt;br /&gt;For this purpose, we also develop more concrete, &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;biophysical models&lt;/span&gt;.&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://3.bp.blogspot.com/_pRshAc6BF_w/SCFP6jDRfMI/AAAAAAAAAIE/ShTBoC0-Egs/s1600-h/screen_007.gif"&gt;&lt;img style="margin: 0pt 10px 10px 0pt; float: left; cursor: pointer;" src="http://3.bp.blogspot.com/_pRshAc6BF_w/SCFP6jDRfMI/AAAAAAAAAIE/ShTBoC0-Egs/s200/screen_007.gif" alt="" id="BLOGGER_PHOTO_ID_5197523312222239938" border="0" /&gt;&lt;/a&gt;The bead is described as a node in a simple &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;&lt;a href="http://dl.dropbox.com/u/1720979/various/MediumNet.gif"&gt;network of developing stress fibers&lt;/a&gt;&lt;/span&gt; that act as springs. The biophysical remodelling of the network, i.e. the &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;temporal growth and degradation of the fibers&lt;/span&gt;, corresponds to a temporal change of the spring parameters, like their rest lengths and stiffness. In this way, the long time memory of the bead's transport direction can be traced back to &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;correlations in the fiber remodelling processes&lt;/span&gt;.&lt;br /&gt;&lt;br /&gt;Since the remodelling processes are regulated by a biochemical reaction network, the correlations must be ultimately explained by a &lt;span style="color: rgb(0, 0, 0); font-weight: bold;"&gt;theory of fluctuations in nonlinear chemical reaction systems&lt;/span&gt;.&lt;br /&gt;&lt;br /&gt;First results have been published in &lt;a href="http://rent-a-theorist.net/Rumpelkammer/metzner07.pdf"&gt;Metzner-07&lt;/a&gt;,  &lt;a href="http://rent-a-theorist.net/Rumpelkammer/raupach07.pdf"&gt;Raupach-07&lt;/a&gt;  and &lt;a href="http://lpmt090.biomed.uni-erlangen.de/~cmetzner/thesis_Carina.pdf"&gt;Raupach-08 (thesis)&lt;/a&gt;.&lt;br /&gt;&lt;br /&gt;On a more macroscopic level, the cytoskeletal network may be described by a continuum material with complex rheological properties. The motion of any point in such a "medium" can then be explained by the interplay of the time-dependent forces acting on that point and the rheological response function of the medium. Some preliminary ideas along those lines have been presented in a&lt;a href="http://www.rent-a-theorist.de/Rumpelkammer/Huxley_Sollich_Rheology.pdf"&gt; talk&lt;/a&gt;.&lt;br /&gt;&lt;br /&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-209573712919690052?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/209573712919690052'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/209573712919690052'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2008/05/spontaneous-csk-activity.html' title='cytoskeletal fluctuations'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://bp2.blogger.com/_pRshAc6BF_w/SCBx-zDRfGI/AAAAAAAAAHQ/cqC9RMwACkk/s72-c/cskNet2.gif' height='72' width='72'/></entry><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-9066693728925943743</id><published>2008-05-06T16:29:00.051+02:00</published><updated>2009-07-08T19:40:27.529+02:00</updated><title type='text'>cell migration</title><content type='html'>One of our current projects is a coarse-grained description of &lt;span style="font-weight: bold;"&gt;migrating cells as self-propelled, adaptive agents in a co&lt;/span&gt;&lt;span style="font-weight: bold;"&gt;mplex potential landscape&lt;/span&gt;.&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://4.bp.blogspot.com/_pRshAc6BF_w/SlTYVNXhUPI/AAAAAAAAAks/1EcpxFdjkOQ/s1600-h/screen_004.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 200px; height: 169px;" src="http://4.bp.blogspot.com/_pRshAc6BF_w/SlTYVNXhUPI/AAAAAAAAAks/1EcpxFdjkOQ/s200/screen_004.gif" alt="" id="BLOGGER_PHOTO_ID_5356143715727528178" border="0" /&gt;&lt;/a&gt;Typical questions arising in that context are as follows:&lt;br /&gt;&lt;ul&gt;&lt;li&gt;Assume a given network of bio-polymer fibers with known elastic response.  Imagine embedded into this network a passive, spherical model cell of given elastic properties. What is the resulting effective 3D potential energy landscape ? Is it unique ? How can the viscosity or the active shape changes of the cell be included in a coarse-grained way ?&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;Can the complex internal reorganizations of the cytoskeleton, the time-dependent point forces onto the extracellular matrix and the resulting matrix deformation be translated into an effective total force acting on the cell center ?&lt;br /&gt;&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;What are the statistical properties of this effective migration force and what are the properties of the resulting random walk in the complex potential landscape (mean squared displacement, step with distribution) ?&lt;/li&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;Can adaption of the cell to the local environment be incorporated into that model as a functional dependence of the statistical force parameters on the local shape of the potential landscape ? If yes, how must this adaptive modulation of force statistics be optimized in order to achieve efficient (fast and energy saving) migration ?&lt;/li&gt;&lt;/ul&gt;Some initial ideas have been posted in a &lt;a href="http://cmscience.blogspot.com/2009/02/imcm-1-cell-body-in-complex-environment.html"&gt;research blog&lt;/a&gt;.&lt;br /&gt;&lt;br /&gt;At present, we also follow a data-driven approach in order to understand cell migration: Living tumor cells are brought on the surface of a collagen gel with controlled mechanical properties. The &lt;span style="font-weight: bold;"&gt;invasion of the tumor cells into&lt;/span&gt; the &lt;span style="font-weight: bold;"&gt;collagen gel&lt;/span&gt; is then observed with a light microscope, resulting in trajectories of the individual cells, or more conveniently, distribution functions.&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://2.bp.blogspot.com/_pRshAc6BF_w/SlTZw4D8R2I/AAAAAAAAAk0/_v89Pifsq7U/s1600-h/invPic1.png"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 111px; height: 200px;" src="http://2.bp.blogspot.com/_pRshAc6BF_w/SlTZw4D8R2I/AAAAAAAAAk0/_v89Pifsq7U/s200/invPic1.png" alt="" id="BLOGGER_PHOTO_ID_5356145290556229474" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;We now try to model the time-dependent invasion profiles &lt;span style="font-weight: bold;"&gt;as a stochastic process&lt;/span&gt;, described by Fokker-Planck equations with suitable diffusion and drift terms.&lt;br /&gt;&lt;br /&gt;For first ideas and results, see the &lt;a href="http://cmscience.blogspot.com/2009/04/cell-invasion-1.html"&gt;research blog&lt;/a&gt;.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-9066693728925943743?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/9066693728925943743'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/9066693728925943743'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2008/05/rheological-csk-response.html' title='cell migration'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://4.bp.blogspot.com/_pRshAc6BF_w/SlTYVNXhUPI/AAAAAAAAAks/1EcpxFdjkOQ/s72-c/screen_004.gif' height='72' width='72'/></entry><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-4602189882731219721</id><published>2008-05-06T14:59:00.029+02:00</published><updated>2010-08-24T09:16:04.607+02:00</updated><title type='text'>recent publications (biophysics)</title><content type='html'>&lt;span style="font-size:100%;"&gt;&lt;div&gt;&lt;span style="font-size:100%;"&gt;&lt;div&gt;* C. Metzner, C. Raupach, C.T. Mierke, and B. Fabry,&lt;/div&gt;&lt;div&gt;&lt;b&gt;Fluctuations of cytoskeleton-bound microbeads—&lt;/b&gt;&lt;/div&gt;&lt;div&gt;&lt;b&gt;the effect of bead–receptor binding dynamics&lt;/b&gt;,&lt;/div&gt;&lt;div&gt;J. Phys.: Condens. Matter 22 194105 (2010) . &lt;a href="http://dl.dropbox.com/u/1720979/blogMaterial/metzner10_BeadBindDyn.pdf"&gt;PDF&lt;/a&gt;&lt;/div&gt;&lt;/span&gt;&lt;/div&gt;&lt;div&gt;&lt;span style="font-size:100%;"&gt;&lt;br /&gt;&lt;/span&gt;&lt;/div&gt;* C. Metzner, M. Sajitz-Hermstein, M. Schmidberger, and B. Fabry,&lt;br /&gt;&lt;span style="font-weight: bold;"&gt;Noise and critical phenomena in biochemical signaling cycles&lt;/span&gt;&lt;br /&gt;&lt;span style="font-weight: bold;"&gt;at small molecule numbers&lt;/span&gt;,&lt;br /&gt;Phys. Review E 80, 021915 (2009). &lt;a href="http://dl.dropbox.com/u/1720979/blogMaterial/metzner09_BiochemNoise.pdf"&gt;PDF&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;* C. Raupach, D. Zitterbart, C. Mierke, C. Metzner, F. Müller, and Ben Fabry,&lt;/span&gt;&lt;span style="font-style: italic;font-size:100%;"&gt;&lt;br /&gt;&lt;/span&gt;&lt;span style="color: rgb(51, 51, 51); font-weight: bold;font-size:100%;"&gt;Stress fluctuations and motion of cytoskeletal-bound markers&lt;/span&gt;&lt;span style="font-style: italic;font-size:100%;"&gt;,&lt;/span&gt;&lt;span style="font-size:100%;"&gt;&lt;br /&gt;Phys. Rev. E 76, 011918 (2007). &lt;a href="http://dl.dropbox.com/u/1720979/blogMaterial/raupach07_CytoFluct.pdf"&gt;PDF&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;* C. Metzner, C. Raupach, D. Zitterbart, and B. Fabry,&lt;br /&gt;&lt;span style="font-weight: bold; color: rgb(51, 51, 51);"&gt;Simple model of cytoskeletal fluctuations&lt;/span&gt;,&lt;br /&gt;Phys. Rev. E 76, 021925 (2007). &lt;a href="http://dl.dropbox.com/u/1720979/blogMaterial/metzner07_CytoModel.pdf"&gt;PDF&lt;/a&gt;&lt;/span&gt;&lt;div&gt;&lt;br /&gt;&lt;span style="font-style: italic;"&gt;&lt;/span&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-4602189882731219721?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/4602189882731219721'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/4602189882731219721'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2008/05/recent-publications.html' title='recent publications (biophysics)'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author></entry><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-3617305158124303775</id><published>2008-05-06T14:53:00.006+02:00</published><updated>2008-07-18T16:34:22.798+02:00</updated><title type='text'>older publications (semiconductor nanostructures)</title><content type='html'>&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="font-size:78%;"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;* H.J. Beyer, C. Metzner, J. Heitzer and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Temperature dependence of the tunable luminescence, absorption and gain spectra of n-i-p-i doping superlattices  - Theory and comparison with experiment,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Superlattices and Microstructures  6, 351-356 (1989).&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner, H.J. Beyer and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Theory of donor-acceptor-pair luminescence in d-doping n-i-p-i superlattices,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B  46, 4128-4138 (1992). &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/TheoryOfDAPairLumi.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner, S.G. Müller, T. Schmidt and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Classical theory of impurity bands in excited d-doping n-i-p-i superlattices,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Superlattices and Microstructures  12, 101-106 (1992).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* K. Schrüfer, S. Eckl, C.Metzner, H.J. Beyer and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Thomas-Fermi theory of n-i-p-i doping superlattices,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;J. Appl. Phys.  72 (10), 4992-4994 (1992).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/ThomasFermi.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* T. Schmidt, C. Metzner, S.G. Müller and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Classical theory of impurity bands in d-doping superlattices,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B  47, 10633-10647 (1993).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/ClassicalTheoryIB.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* M. Renn, C. Metzner and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Effect of random impurity distribution on the luminescence of doping superlattices,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B  48, 11220-11227 (1993).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/EffectOfRandom.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* K. Schrüfer, C. Metzner, U. Wieser, M. Kneissl and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Quantum effects of potential fluctuations in GaAs d-doping superlattices,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Superlattices and Microstructures  15 (4), 413-420 (1994).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner, K. Schrüfer, U. Wieser, M. Luber, M. Kneissl and G.H. Döhler, &lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Disorder effects on luminescence in d-doped n-i-p-i superlattices,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B.  51, 5106-5115 (1995).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/DisorderEffects.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* T. Schmidt, St.G. Müller, K.H. Gulden, C. Metzner and G.H. Döhler, &lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;In-plane transport properties of heavily d-doped GaAs n-i-p-i superlattices: Metal-insulator transition, weak and strong localization,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B  54, 13980-13995 (1996).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/InPlaneTransport.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* J. Schönhut, C. Metzner, S. Müller, T. Schmidt, G.H. Döhler, A. Förster and H. Lüth, &lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Optical investigations of impurity bands in a d-doped n-layer,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;sol. state electron. 40, 701-705 (1996).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/OpticalInvestigation.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* K. Schrüfer, C. Metzner, M. Hofmann and G.H. Döhler, &lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Nonlinear impurity screening and metal insulator transition in strongly depleted 2D electron gases,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Superlattices and Microstructures  21, 223-230 (1997).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/NonLinearScreening.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner, G.H. Döhler and H. Sakaki,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Localization of Quantum Well Excitons by Lateral Disorder. A Numerical Study,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;phys. stat. sol. (a)  164, 471-476 (1997).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/QWExcitons.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* S. Tsujino, C. Metzner, T. Noda and H. Sakaki,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Saturation of Intersubband Absorption by Real-Space Transfer in Modulation Doped Single GaAs-AlAs Quantum Well,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;phys. stat. sol. (b)  204, 162-165 (1997).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/SaturationOfISAbs.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner, M. Hofmann and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Intersubband transitions of a quasi-two-dimensional electron gas in the strong disorder regime,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B 58, 7188-7196 (1998).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/ISQuasi2D.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* S. Rott, K. Schrüfer, C. Metzner et. al.,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Screening in a d-doped semiconductor,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Superlattices and Microstructures  23, 315-321 (1998).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/ScreeningDeltaDoping.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner, M. Hofmann and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Effects of extreme disorder on electronic properties in d-doped semiconductor microstructures - a realistic computer simulation,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Superlattices and Microstructures  25, 239-246 (1999).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/ExtremeDisorder.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner, G. Yusa and H. Sakaki,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Modelling of inter-dot Coulomb interaction effects in field-effect transistors with embedded quantum dot layer,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Superlattices and Microstructures  25, 537-549 (1999).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/FieldEffect.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Collective optical excitation of interacting localized electrons,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B  60, 11005-11013 (1999).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/CollectiveExcitation.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner, C. Steen, M. Hofmann, M. Hackenberg  and G.H. Döhler, &lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Interplay of disorder and tunneling in coupled quantum well structures - Tuning the intersubband lineshape by an electric field,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Physica E  7, 722-725 (2000).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/InterplayDisTun.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Role of dynamic depolarization for the intersubband resonance in the localization regime,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Physica E  7, 718-721 (2000).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/RoleOfDepol.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner, C. Steen, R. Winkler, M. Hofmann, M. Hackenberg and G.H. Döhler,  &lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Intersubband transitions in coupled wells with disorder,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Physica E  6, 606 (2000).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/ISCoupledWells.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Steen, C. Metzner, M. Hofmann and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Absorption of in-plane polarized light in quasi-2D systems enabled by strong potential fluctuations,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Physica E  7, 220 (2000).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/AbsInPlanePolar.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* M. Hackenberg, C. Metzner, M. Hofmann and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Subband selective disorder in a quasi-2D system and its effect on the intersubband spectrum,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Physica E  7, 216 (2000).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/SubbandSelectiveDis.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* S. Tsujino, M. Rüfenacht, H. Nakajima, T. Noda, C. Metzner and H. Sakaki,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Peak position of the intersubband absorption spectrum of quantum wells with controlled electron concentration, &lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B  62, 1560 (2000).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/PeakPosIS.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt; &lt;br /&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;* C. Metzner,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Intersubband Excitations in Disordered Systems&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;&lt;span style="color: rgb(255, 0, 0);"&gt;Habilitation Thesis&lt;/span&gt; (2000). &lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/hab.pdf"&gt;PDF&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;&lt;br /&gt;&lt;span style=""&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* W.V. Schoenfeld, C. Metzner, E. Letts and P.M. Petroff,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Spectroscopy of strain-induced quantum dots in GaAs/AlGaAs quantum well structures,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B  63, 205319 (2001).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/StrainInducedDots.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* R. Grill, C. Metzner and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Unrestricted Hartree-Fock cluster calculation of donor-acceptor-pair luminescence in d-doped n-i-p-i superlattices,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B  63, 235316 (2001).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/UnresHarteeFock.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* M. Beck, D. Streb, M. Vitzethum, P. Kiesel, S. Malzer, C. Metzner, and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Ambipolar drift of spatially separated electrons and holes,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B  64, 085307 (2001).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/UnresHarteeFock.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* I. Shtrichman, C. Metzner, E. Ehrenfreund, D. Gershoni, K.D. Maranowski, and A.C. Gossard, &lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Depolarization Shift of the Intersubband Resonance in a Quantum Well with Electron-Hole Plasma,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B  65, 035310 (2001).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/DepolarizationShift.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* I. Shtrichman, C. Metzner, B.D. Geradot, W.V. Schoenfeld, and P.M. Petroff, &lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Photoluminescence of a single InAs quantum dot molecule under applied electric field,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B (Rapid Com.)  65, 081303(R) (2002).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/DotInField.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* N. Riemann, C. Metzner, and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Density dependent intersubband absorption in strongly disordered systems,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B  65, 115304 (2002).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/DensityDependentIS.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Controlling a cluster of interacting quantum dot molecules by laser pulses – a computer experiment,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;phys. stat. sol. (c)  4, 1360 (2003).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/ControllingCluster.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* C. Metzner, D. Stehr, &lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Mesoscopic dots as collective terahertz oscillators,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B 70, 195433 (2004).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/MesoDots.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* D. Stehr, C. Metzner, M. Helm, T. Roch , and G. Strasser,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Resonant Impurity Bands in Semiconductor Superlattices,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. Lett. 95, 257401 (2005).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/ResonantImpurityPRL.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* M. Beck, C. Metzner, S. Malzer,  and G.H. Döhler,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Spin lifetimes and strain-controlled spin precession of drifting electrons in GaAs,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Europhysics Letters 75 (4), 597-603 (2006).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* R. Schmidt, U. Scholz, M. Vitzethum, R. Fix, C. Metzner, et al.&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Fabrication of genuine single-quantum-dot light-emitting diodes,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Appl. Phys. Letters 88, Rev. B  70, 121115 (2006).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/DotLED.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;&lt;/span&gt;&lt;br /&gt;  &lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;* D. Stehr and M. Helm, C. Metzner, M.C. D. Wanke, &lt;/span&gt;&lt;br /&gt;        &lt;span style="font-weight: bold;font-family:Tahoma;" &gt;Microscopic theory of impurity states in coupled quantum wells and superlattices,&lt;/span&gt;&lt;br /&gt;        &lt;span style="font-family:Tahoma;"&gt;Phys. Rev. B 74, 085311 (2006).&lt;/span&gt;&lt;/span&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt; &lt;/span&gt;&lt;/span&gt;&lt;a href="http://lpmt090.biomed.uni-erlangen.de/%7Ecmetzner/MicroscopicTheoryIS.pdf"&gt;&lt;span style=""&gt;&lt;span style="font-family:Tahoma;"&gt;PDF&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;/span&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-3617305158124303775?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/3617305158124303775'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/3617305158124303775'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2008/05/publications.html' title='older publications (semiconductor nanostructures)'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author></entry><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-4127895703881219275</id><published>2008-05-06T14:36:00.010+02:00</published><updated>2009-07-09T10:28:36.790+02:00</updated><title type='text'>contact</title><content type='html'>&lt;span style="font-weight: bold;"&gt;Delocalized&lt;/span&gt;:&lt;br /&gt;Email:        claus.metzner@gmx.net&lt;br /&gt;Mobile:    0151 206 12304&lt;br /&gt;&lt;br /&gt;&lt;span style="font-weight: bold;"&gt;University&lt;/span&gt;:&lt;br /&gt;ZMPT, Room 02.078&lt;br /&gt;Henkestr. 91&lt;br /&gt;91052 Erlangen&lt;br /&gt;Germany&lt;br /&gt;Phone:     +49 (0)9131 852 5615&lt;br /&gt;Fax:         +49 (0)9131 852 5601&lt;br /&gt;&lt;br /&gt;&lt;span style="font-weight: bold;"&gt;Private&lt;/span&gt;:&lt;br /&gt;Schleifmühlstr. 6&lt;br /&gt;91054 Erlangen&lt;br /&gt;Phone:     +49 (0) 9131 973037&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-4127895703881219275?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/4127895703881219275'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/4127895703881219275'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2008/05/contact.html' title='contact'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author></entry><entry><id>tag:blogger.com,1999:blog-1058129347612814134.post-6079732064164275918</id><published>2008-05-06T13:50:00.019+02:00</published><updated>2010-04-30T15:13:43.950+02:00</updated><title type='text'>curriculum vitae</title><content type='html'>&lt;span style="font-weight: bold; color: rgb(153, 153, 153);"&gt;Preparations:&lt;/span&gt;&lt;br /&gt;&lt;ul  style="font-family:arial;"&gt;&lt;li&gt;5 billion years of evolutionary optimization&lt;br /&gt;&lt;/li&gt;&lt;li&gt;&lt;span style="font-size:100%;"&gt;Birth (08.Feb, 1964)&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;span style="font-weight: bold; color: rgb(153, 153, 153);"&gt;Theory of Semiconductor Nanostructures:&lt;/span&gt;&lt;br /&gt;&lt;ul  style="font-family:arial;"&gt;&lt;li&gt;&lt;span style="font-size:100%;"&gt;Diploma (89)&lt;/span&gt;&lt;/li&gt;&lt;li&gt;&lt;span style="font-size:100%;"&gt;Civil Service (89-90)&lt;/span&gt;&lt;/li&gt;&lt;li&gt;&lt;span style="font-size:100%;"&gt;PhD (90-94)&lt;/span&gt;&lt;/li&gt;&lt;li&gt;&lt;span style="font-size:100%;"&gt;Postdoc, University of Tokyo (95-97)&lt;/span&gt;&lt;/li&gt;&lt;li&gt;&lt;span style="font-size:100%;"&gt;Habilitation (97-01)&lt;/span&gt;&lt;/li&gt;&lt;li&gt;&lt;span style="font-size:100%;"&gt;Postdoc, University of California, Santa Barbara (00-01)&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;span style="font-weight: bold; color: rgb(153, 153, 153);"&gt;Theory of Complex Systems:&lt;/span&gt;&lt;br /&gt;&lt;ul style="font-family:arial;"&gt;&lt;li&gt;&lt;span style="font-size:100%;"&gt;Privatdozent, University of Erlangen (since 01)&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;span style="font-weight: bold; color: rgb(153, 153, 153);"&gt;Theoretical Biophysics:&lt;/span&gt;&lt;br /&gt;&lt;ul face="arial"&gt;&lt;li&gt;&lt;span style="font-size:100%;"&gt;Collaboration with Prof. Ben Fabry (05-06))&lt;/span&gt;&lt;/li&gt;&lt;li&gt;&lt;span style="font-size:100%;"&gt;Member of Fabry Biophysics Group (since 06)&lt;/span&gt;&lt;/li&gt;&lt;/ul&gt;&lt;span style="font-size:100%;"&gt;&lt;br /&gt;&lt;a href="http://dl.dropbox.com/u/1720979/blogMaterial/CV_ClausMetzner.pdf"&gt;Long CV as PDF&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;/span&gt;&lt;a href="http://dl.dropbox.com/u/1720979/blogMaterial/PL_ClausMetzner.pdf"&gt;List of Journal Publications as PDF&lt;/a&gt;&lt;span style="font-size:100%;"&gt;&lt;/span&gt;&lt;div&gt;&lt;br /&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1058129347612814134-6079732064164275918?l=cmbiophys.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/6079732064164275918'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1058129347612814134/posts/default/6079732064164275918'/><link rel='alternate' type='text/html' href='http://cmbiophys.blogspot.com/2008/05/test.html' title='curriculum vitae'/><author><name>CM</name><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='24' src='http://bp0.blogger.com/_pRshAc6BF_w/SD0IhQFUvxI/AAAAAAAAAPE/OK2bH2PS_YU/S220/cmOnBench.gif'/></author></entry></feed>
